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DySTrack Docs

  • Getting started
  • Running DySTrack
  • Image analysis pipelines
  • API Reference
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  • Getting started
  • Running DySTrack
  • Image analysis pipelines
  • API Reference
  • GitHub

Section Navigation

  • DySTrack core module (dystrack.manager)
    • Main event loop manager (manager.manager)
    • Command line application (manager.cmdline)
    • Send coordinates to microscope (manager.transmitters)
  • Image analysis pipelines (dystrack.pipelines)
    • Center-of-mass tracking
    • Zebrafish posterior lateral line primordium
    • Chick Hensen's node regression
    • Utilities
  • API Reference
  • Image analysis pipelines

Image analysis pipelines#

Pre-made image analysis pipeline functions and relevant utilities.

  • Center-of-mass tracking
  • Zebrafish posterior lateral line primordium
  • Chick Hensen's node regression
  • Utilities
    • robustly_load_image_after_write()
    • constrain_z_movement()

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